As we think about the next few years of khmer development, it is helpful to explore what khmer is, and what our goals for khmer development are. This can provide guiding principles for development, refactoring, extension, funding requests, and collaborations.
Comments solicited!
Links:
There are comments.
Here's an excerpt from an e-mail to a student whose committee I'm on; they were asking me about a comment their advisor had made that they shouldn't put a result in a paper because "It'll confuse the reviewer."
One thing to keep in mind is that communicating the results _is_ …read more
There are comments.
Sean Eddy wrote an interesting blog post on how scripting is something every biologist should learn to do. This spurred a few discussions on Twitter and elsewhere, most of which devolved into the usual arguments about what, precisely, biologists should be taught.
I always find these discussions not merely predictable …
read moreThere are comments.
Since being chosen as a Moore Foundation Data Driven Discovery Investigator, I've been putting together the paperwork at UC Davis to actually receive the money. Part of that is putting together a budget and a Statement of Work to help guide the conversation between me, Davis, and the Moore Foundation …
read moreThere are comments.
Yesterday I gave my third keynote address ever, at the Australasian Genomics Technology Association's annual meeting in Melbourne (talk slides here). On my personal scale of talks, it was a 7 or 8 out of 10: I gave it a lot of energy, and I think the main messages got …
read moreThere are comments.
A few weeks back, Nick Loman (via Manoj Samanta) brought MEGAHIT to our attention on Twitter. MEGAHIT promised "an ultra-fast single-node solution for large and complex metagenome assembly" and they provided a preprint and some open source software. This is a topic near and dear to my heart (see Pell …
read moreThere are comments.
I am very, very happy to announce that I have been selected to be one of the fourteen Moore Data Driven Discovery Investigators.
This is a signal investment by the Moore Foundation into the burgeoning area of data-intensive science, and it is quite a career booster. It will provide my …
read moreThere are comments.