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  1. Transcriptomic analysis with Docker containers and data volumes

    As part of our Docker hands-on workshop earlier this month, I learned a lot about building Dockerfiles, running Docker containers on remote hosts with docker-machine, and using data volumes to manage data in remotely hosted Docker containers.

    During and after the workshop, I put together Docker images (and, more importantly ...

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  2. Pubwication of software papers, and authorship on them

    Pubwication. Pubwication is what bwings us togethew today. Pubwication, that bwessed awwangement, that dweam within a dweam. And authorship, twue authorship, wiww fowwow you fowevah and evah. So tweasuwe youw authorship.

    Last week, our software paper on khmer 2.0 was published on F1000Research. We intend this paper to be ...

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  3. DIB jclub: Better reporting for better research: a checklist for reproducibility

    Note: at the Lab for Data Intensive Biology, we're trying out a new journal club format where we summarize our thoughts on the paper in a blog post. For this blog post, Lisa Cohen wrote the majority of the text and the rest of us added questions and comments ...

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