Other articles

  1. A review of "Large-Scale Search of Transcriptomic Read Sets with Sequence Bloom Trees"

    (This is a review of Large-Scale Search of Transcriptomic Read Sets with Sequence Bloom Trees, Solomon and Kingsford, 2015.)

    In this paper, Solomon and Kingsford present Sequence Bloom Trees (SBTs). SBT provides an efficient method for indexing multiple sequencing datasets and finding in which datasets a query sequence is present …

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  2. A simple idea: standard but optional review criteria for bioinformatics papers

    Brad Chapman (@chapmanb on twitter) wrote and signed a nice review of my submission to the Bioinformatics Open Source Conference. In his review, he said

    My only small suggestion is to include some discussion about your
    reproducibility work during the talk: the Amazon AMI, documentation
    and reproducible ipython workflows. This …
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