1. An assembly handbook for khmer - rough draft

    An increasing number of people are asking about using our assembly approaches for things that we haven't yet written (or posted) papers about. Moreover, our assembly strategies themselves are also under constant evolution as we do more research and find ever-wider applicability of our approaches.

    This has been moved to …

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  2. The story behind "Scaling Metagenome Assembly with Probabilistic de Bruijn Graphs"

    This is the story behind our PNAS paper, "Scaling Metagenome Assembly with Probabilistic de Bruijn Graphs" (released from embargo this past Monday).

    Why did we write it? How did it get started? Well, rewind the tape 2 years and more...

    There we were in May 2010, sitting on 500 million …

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  3. The Beachcomber's Dilemma

    Here's a data analysis question for all you Big Data folk.

    A beachcomber is interested in obtaining up to 10 examples of every type of shell present on a beach. The shells are individually easy to find, but some types are really rare and some are really abundant. The beachcomber …

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