Here are talk notes and links for my PyCon 2015 talk.
The talk slides are up on SlideShare.
You should definitely check out Mike Lin's great blog posts on "Blogging my genome".
I found SNPedia through this wonderful blog post on how to use 23andMe irresponsibly, on Slate …
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Note: Turns out Nick Loman is a C programmer. Well, that's what happens when I make assumptions, folks ;).
Jared Simpson just posted a great blog entry on nanopolish, an HMM-based consensus caller for Oxford Nanopore data. In it he describes how he moved from a Python prototype to a standalone …
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The apocalypse is nigh. Soon, binary executables and containers in object stores will join the many Web-based pipelines and the several virtual machine images on the dystopic wasteland of "reproducible science."
Anyway.
I had a conversation a few weeks back with a senior colleague about container-based approaches (like Docker) wherein …
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Brian O'Shea (a physics prof at Michigan State) asked me the following, and I thought I'd post it on my blog to get a broader set of responses. I know the answer is "Python 3", but I would appreciate specific thoughts from people with experience either with the specific packages …
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Here's a draft PyCon '14 proposal. Comments and suggestions welcome!
Title: Data intensive biology in the cloud: instrumenting ALL the things
Description: (400 ch)
Cloud computing offers some great opportunities for science, but most cloud computing platforms are both I/O and memory limited, and hence are poor matches for …
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Note: Yarden Katz (the author of MISO) sent me the e-mail below, and I asked him if I could post it as a guest-post on my blog. He said yes - so here it is! Feedback solicited.
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Hi Titus,
Hope all is well. A recent tweet you had about Ben Bolker's …
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