1. Paper draft: Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

    (updated to point to http://arxiv.org/).

    Authors: Jason Pell, Arend Hintze, Rosangela Canino-Koning, Adina Howe, James M. Tiedje, C. Titus Brown


    The memory requirements for de novo assembly of short-read shotgun sequencing data from complex microbial populations are an increasingly large practical barrier to environmental studies. Here we …
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  2. Course: Analyzing Next-Generation Sequencing Data (2011 version)

    The second iteration of our bioinformatics summer course, Analyzing Next-Generation Sequencing Data, just finished. It was a great success, at least judging from the comments that people made to us personally; the evaluations aren't yet complete.

    The what: a two week course on analyzing next-gen sequencing data, using the Amazon …

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