I'm at the PyCon 2015 sprints (day 2), and I took the opportunity to play around with Docker a bit.
First, I created a local docker container that contained an installed version of khmer. I ran a blank docker container:
docker run -it ubuntu
and then installed the khmer prereqs …
read moreThere are comments.
I'm at the PyCon 2015 sprints (day 2), and I took the opportunity to play around with named pipes.
I was reminded of named pipes by Vince Buffalo in this great blog post, and since we at the khmer project are very interested in streaming, and named pipes fit well …
read moreThere are comments.
Here are talk notes and links for my PyCon 2015 talk.
The talk slides are up on SlideShare.
You should definitely check out Mike Lin's great blog posts on "Blogging my genome".
I found SNPedia through this wonderful blog post on how to use 23andMe irresponsibly, on Slate …
There are comments.
Note: Turns out Nick Loman is a C programmer. Well, that's what happens when I make assumptions, folks ;).
Jared Simpson just posted a great blog entry on nanopolish, an HMM-based consensus caller for Oxford Nanopore data. In it he describes how he moved from a Python prototype to a standalone …
read moreThere are comments.
This is a stub blog post for the talk notes for my OpenCon talk on how to get tenure as an open scientist.
A few links --
More …
read moreThere are comments.
A few weeks back, a journalist contacted me about my old blog post comparing physics and biology, and amidst other conversation, I pointed them at my latest blog post on data and said that I thought a lot of (molecular) biologists were "culturally confused about data". The next question was …
read moreThere are comments.