Software installation is a real problem.
I'm writing this as I return from my fourth Software Carpentry workshop, or -- if you count the one I ran at LLNL almost a decade ago -- my fifth one. This workshop was taught with Karen Cranston and Rich Enbody, both of them very experienced …
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The tech community is messed up in da head, yo.
Several times since Steve Holden's I'm Sorry post I've written long blog posts about my own views on codes of conduct and professional behavior, including the views informed by some of my own extraordinarily embarrassing transgressions. I never felt that …
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A week or two ago, I posted a crazy idea about crowdsourcing a bioinformatics analysis pipeline. I may still try to do that. But in the meantime, here's another crazy idea.
First, some background.
I'm writing this as I fly back from …
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Description
Random algorithms and probabilistic data structures are algorithmically efficient and can provide shockingly good practical results. I will give a practical introduction, with live demos and bad jokes, to this fascinating algorithmic niche. I will conclude with some discussions of how our group has applied this to …
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One of the things that I have struggled with over the years is how to teach people how to actually program -- by this I mean the minute-to-minute process and techniques of generating code, more so than syntax and data structures and algorithms. This is generally not taught explicitly in college …
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We just posted yet another pre-submission paper to arXiv.org:
Assembling large, complex environmental metagenomes
Authors: Adina Chuang Howe, Janet Jansson, Stephanie A. Malfatti, Susannah Tringe, James M. Tiedje, and C. Titus Brown
Abstract:
The large volumes of sequencing data required to deeply sample …read more
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We just posted another pre-submission paper to arXiv.org:
Illumina Sequencing Artifacts Revealed by Connectivity Analysis of Metagenomic Datasets
Authors: Adina Chuang Howe, Jason Pell, Rosangela Canino-Koning, Rachel Mackelprang, Susannah Tringe, Janet Jansson, James M. Tiedje, and C. Titus Brown
Abstract:
Sequencing errors and …read more
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