I'm pleased to announce the publication of "Tackling soil diversity with the assembly of large, complex metagenomes", by Adina Howe, Janet Jansson, Stephanie Malfatti, Susannah Tringe, James Tiedje, and myself. The paper is openly available on the PNAS Web site here (open access).
External links:
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Note: updated 2/18 with Benton Gravely's name -- he did the squid genome sequencing!
A few months back, I announced the khmer protocols project, an effort to write down an explicit, open protocol for transcriptome and metagenome assembly. This project was started during the summer of 2013 at the Woods …
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A few months back, we submitted a paper, These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure, to PLoS One. We got the (signed) reviews back in December, and I asked the reviewers if I could post their reviews publicly. They …
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On January 27th, 2014, the MSU BEACON Center graduate students held a panel on how to review. The panel was organized by Emily Weigel (@choosy_female) and Jory Schossau, Bjorn Ostman (@CarnyEvolution), Kristin Parent, Rich Lenski (@RELenski), and Arend Hintze were panel members, together with me.
I put together the following …
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I've just posted the narrative for a recently funded USDA grant on improving the quality of the chick genome assembly on the lab's research page. The issues are laid out in detail in the grant, but, basically, the question is: how can we improve the quality of the assembly? The …
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In 1947 a Bedouin shepherd found a bunch of ancient scrolls in a cave near the Dead Sea. These scrolls, now known as the Dead Sea scrolls, included some of the oldest known Biblical texts as well as other Jewish religious writing. Over the next few decades, these scrolls - of …
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Note: this post is a guest post by Jerome Kelleher. Please also see his letter to Bioinformatics on this topic.
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