Living in an Ivory Basement Stochastic thoughts on science, testing, and programming.

Four steps in five minutes to deploy a Carpentry lesson for a class of 30

Sat 02 December 2017
By C. Titus Brown

In science.

tags: binder docker reproducibility swc carpentry

Binders full of Carpentry!
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Why are taxonomic assignments so different for Tara bins? (Black Friday Morning Bioinformatics)

Fri 24 November 2017
By C. Titus Brown

In science.

tags: bioinformatics tara minhash ngs metagenomics smb taxonomy

A more refined taxonomic analysis
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How specific are k-mers for taxonomic assignment of microbes, anyway?

Thu 09 November 2017
By C. Titus Brown

In science.

tags: bioinformatics minhash ngs metagenomics taxonomy

K-mers are pretty specific at the genus level.
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For want of $2.41... some background on reimbursements.

Tue 31 October 2017
By C. Titus Brown

In science.

tags: reimbursements bureaucracy

I hate reimbursements
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The 2017 binder workshop!

Mon 30 October 2017
By C. Titus Brown

In science.

tags: binder docker reproducibility

We had a workshop! On binder!
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Classifying genome bins using a custom reference database - maybe this time it'll work?

Sun 29 October 2017
By C. Titus Brown

In science.

tags: bioinformatics tara minhash ngs metagenomics taxonomy smb

Classifying genome bins with a custom database! Another try!
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Grokking "custom" taxonomies.

Sun 22 October 2017
By C. Titus Brown

In science.

tags: bioinformatics tara minhash ngs metagenomics taxonomy smb

Sometimes things disagree with NCBI. What then?
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