snakemake for doing bioinformatics - using wildcards to generalize your rules Slithering your way into bioinformatics with snakemake, wildcard version read more There are comments.
A brief overview of automation and parallelization options in UNIX/on an HPC Automating things! Parallelizing them! read more There are comments.
snakemake for doing bioinformatics - a beginner's guide (part 2) Slithering your way into bioinformatics with snakemake, round 2. read more There are comments.
snakemake for doing bioinformatics - a beginner's guide (part 1) Slithering your way into bioinformatics with snakemake read more There are comments.
sourmash has a plugin interface! Enabling plugins in sourmash, for less directed & more incoherent progress! read more There are comments.
So! You want to search all the public metagenomes with a genome sequence! Searching all the things - faster! read more There are comments.
Storing 64-bit unsigned integers in SQLite databases, for fun and profit Storing unsigned longs in SQLite is possible, and can be fast. read more There are comments.