1. Thinking about software architecture for heterogeneous data integration

    I just left the NAS meeting on Integrating Environmental Health Data to Advance Discovery, where I was an invited speaker. It was a pretty interesting meeting, with presentations from speakers who worked on chemotoxicity data, pollution data, exposure data, and electronic health records, as well as a few "outsiders" from …

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  2. Assembling the heck out of soil - paper posted

    We just posted yet another pre-submission paper to arXiv.org:

    Assembling large, complex environmental metagenomes

    Authors: Adina Chuang Howe, Janet Jansson, Stephanie A. Malfatti, Susannah Tringe, James M. Tiedje, and C. Titus Brown

    arXiv link

    Paper repository on github

    Abstract:

    The large volumes of sequencing data required to deeply sample …
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  3. Assembly artifacts paper posted

    We just posted another pre-submission paper to arXiv.org:

    Illumina Sequencing Artifacts Revealed by Connectivity Analysis of Metagenomic Datasets

    Authors: Adina Chuang Howe, Jason Pell, Rosangela Canino-Koning, Rachel Mackelprang, Susannah Tringe, Janet Jansson, James M. Tiedje, and C. Titus Brown

    arXiv link

    Paper repository on github

    Abstract:

    Sequencing errors and …
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