Create a github repository named something like '2014-paper-xxxx'. Ask me for name suggestions.
In that github repo, do the following:
Write a Makefile or some other automated way of generating all results from data - see
https://github.com/ged-lab/2013-khmer-counting/blob/master/pipeline/Makefile
or ask Camille (@camille_codon) what she …
There are comments.
These are the talk notes for my opening talk at the 2014 Bioinformatics Open Source Conference.
Normally my talk notes aren't quite so extensive, but for some reason I thought it would be a good idea to give an "interesting" talk, so my talk title was "A History of Bioinformatics …
read moreThere are comments.
I'm at the 2014 Marine Microbes Gordon Conference right now, and at the end of my talk, I brought up the point that the function of most genes is unknown. It's not a controversial point in any community that does environmental sequencing, but I feel it should be mentioned at …
read moreThere are comments.
We just released khmer v1.1, a minor version update from khmer v1.0.1 (minor version update: 220 commits, 370 files changed).
Cancel that -- _I_ just released khmer, because I'm the release manager for v1.1!
As part of an effort to find holes in our documentation, "surface" any …
read moreThere are comments.
Eli Kintisch (@elikint) just wrote a very nice article on "Sharing in Science" for Science Careers; his article contained quotes from my MSU colleague Ian Dworkin as well as from me.
When Eli sent me an e-mail with some questions about open science, I responded at some length (hey, I …
read moreThere are comments.
As part of the 2-day Mozilla Science Labs hackathon in late July, the khmer project will be providing a "mentored open source contributathon" experience. This will provide an opportunity for people interested in trying out our instance of the "github flow" model, in which contributions are submitted for review using …
read moreThere are comments.