Every year since 2010, I've been the primary organizer for a summer workshop on Analyzing Next Generation Sequencing Data. In 2010 and 2011, I was funded internally by the Gene Expression in Disease and Development group at MSU; since 2012, I've had a $50,000/yr grant from the NIH …
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As part of our Docker hands-on workshop earlier this month, I learned a lot about building Dockerfiles, running Docker containers on remote hosts with docker-machine, and using data volumes to manage data in remotely hosted Docker containers.
During and after the workshop, I put together Docker images (and, more importantly …
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What are the most concretely useful, interesting, awesome or neat things about Project Jupyter?
Over here at the Lab for Data Intensive Biology, we're putting on a workshop on Project Jupyter notebooks (the notebook system formerly known as IPython Notebook). This will be a two-day hands-on workshop, Carpentry-style, with the …
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I've often wanted to mark up arbitrary Web sites with annotations and reminders, and it's always been puzzling to me that this is missing from the Web. In recent years, I've heard more and more about a small non-profit called Hypothesis, which provides this general functionality via both a Chrome …
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This version of the site policy was posted in Oct 2015 and applies going forward from then. I'll provide an updated link whenever I update the policy.
The text was lifted from Captain Awkward's site policy at the URL http://captainawkward.com/site-policies-and-faqs/ on Oct 19, 2015, and then modified …
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Pubwication. Pubwication is what bwings us togethew today. Pubwication, that bwessed awwangement, that dweam within a dweam. And authorship, twue authorship, wiww fowwow you fowevah and evah. So tweasuwe youw authorship.
Last week, our software paper on khmer 2.0 was published on F1000Research. We intend this paper to be …
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Note: at the Lab for Data Intensive Biology, we're trying out a new journal club format where we summarize our thoughts on the paper in a blog post. For this blog post, Lisa Cohen wrote the majority of the text and the rest of us added questions and comments; Lisa …
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