I was one of the reviewers of the Salmon paper by Patro et al., 2017, Salmon provides fast and bias-aware quantification of transcript expression. I was asked to review the paper on September 14, 2016, and submitted my review (or at least stopped getting reminders :) soon after October 20th.
The …
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This blog post stems from notes I made for a 12 minute talk at the Oregon State Microbiome Initiative, which followed from some previous thinking about data integration on my part -- in particular, Physics ain't biology (and vice versa) and What to do with lots of (sequencing) data.
My talk …
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We just finished teaching a second version of our two-day shotgun metagenome analysis workshop, this time at UC Santa Cruz (the first one was in October 2016, at Scripps Institute of Oceanography). Harriet Alexander led the workshop and Phillip Brooks and I co-taught; Luiz Irber, Shannon Joslin, and Taylor Reiter …
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As part of our Summer Institute in Data Intensive Biology, we will be running nine week-long computational workshops from July 10 to July 17 at the University of California, Davis.
Week 1: July 10-15
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Our two-week summer workshop (announcement, direct link) is shaping up quite well, but the application deadline is today! So if you're interested, you should apply sometime before the end of the day. (We'll leave applications open as long as it's March 17th somewhere in the world.)
Some updates and expansions …
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So I've been invited to Imagining Tomorrow's University, and they have this series of questions they'd like me to answer.
(Note that you can follow the conversation at #TomorrowsUni on Twitter.)
Conveniently I already answered many of these questions in my "What is Open Science?" blog post. I've copy/pasted …
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As part of our Summer Institute in Data Intensive Biology, we will be running a week-long instructor training from June 18 to June 25 at the University of California, Davis.
The instructor training will include the following --
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