Two different binning procedures, on different data, produce somewhat different bins. Duh.
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I was one of the reviewers of the Salmon paper by Patro et al., 2017, Salmon provides fast and bias-aware quantification of transcript expression, and I posted my review in large part because of Lior Pachter's blog post levying charges of intellectual theft and dishonest against the Salmon authors. More …
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I was one of the reviewers of the Salmon paper by Patro et al., 2017, Salmon provides fast and bias-aware quantification of transcript expression. I was asked to review the paper on September 14, 2016, and submitted my review (or at least stopped getting reminders :) soon after October 20th.
The …
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This blog post stems from notes I made for a 12 minute talk at the Oregon State Microbiome Initiative, which followed from some previous thinking about data integration on my part -- in particular, Physics ain't biology (and vice versa) and What to do with lots of (sequencing) data.
My talk …
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We just finished teaching a second version of our two-day shotgun metagenome analysis workshop, this time at UC Santa Cruz (the first one was in October 2016, at Scripps Institute of Oceanography). Harriet Alexander led the workshop and Phillip Brooks and I co-taught; Luiz Irber, Shannon Joslin, and Taylor Reiter …
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