6. Classifying genome bins using a custom reference database, part II

   Classifying genome bins with a custom database! Part 2!

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7. Classifying genome bins using a custom reference database, part I (Saturday Morning Bioinformatics)

   Classifying genome bins! With pictures!

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8. Taxonomic examinations of genome bins from Tara Oceans (Honorary Sunday Morning Bioinformatics)

   An initial taxonomical investigation of the genome bins.

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9. Comparing genome sets extracted from metagenomes (Sunday Morning Bioinformatics).

   Two different binning procedures, on different data, produce somewhat different bins. Duh.

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10. A post about k-mers - this time for taxonomy!

    A brief literature review: MetaPalette, mash/MinHash, and Kraken.

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11. Advancing metagenome classification and comparison by MinHash fingerprinting of IMG/M data sets.

    This is our just-submitted proposal for the JGI-NERSC "Facilities Integrating Collaborations for User Science" call. Enjoy!

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    1. Brief description: (Limit 1 page)

    Abstract: Sourmash is a command-line tool and Python library that calculates and compares MinHash signatures from sequence data. Sourmash "compare" and "gather" functionality enables comparison and characterization of signatures …

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12. Categorizing 400,000 microbial genome shotgun data sets from the SRA

    This is another blog post on MinHash sketches; see also:

    • Applying MinHash to cluster RNAseq samples
    • MinHash signatures as ways to find samples, and collaborators?
    • Efficiently searching MinHash Sketch collections
    • Quickly searching all the microbial genomes, mark 2 - now with archaea, phage, fungi, and protists!
    • What metadata should we put …

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