Two talks at JGI in May: sourmash, spacegraphcats, and disease associations in the human microbiome. Using k-mers and taxonomy to find contamination in metagenomes read more There are comments.
sourmash-oddify: a workflow for exploring contamination in metagenome-assembled genomes Using k-mers and taxonomy to find contamination in metagenomes read more There are comments.
Finding problematic bacterial/archaeal genomes using k-mers and taxonomy Some things in Genbank look ...odd. read more There are comments.
How does sourmash's lca classification routine compare with GTDB classifications? GTDB databases again! read more There are comments.
Sourmash LCA databases now available for the GTDB taxonomy GTDB databases! read more There are comments.
An initial report on the Common Fund Data Ecosystem Helping DCCs get FAIRer read more There are comments.
Comparing two genome binnings quickly with sourmash Comparing two sets of MAGs, for fun and profit! read more There are comments.