My advice to graduate students: blog! post garnered some interesting comments here and there. Most of the responses were positive, but then again, most anyone who reads blogs probably doesn't need to be convinced that blogging is useful. In particular, note that some of the comments at the bottom of …
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I've been reading Peter Seibel's excellent book, Coders at Work, which is a transcription of interviews with a dozen or so very well known and impactful programmers. After the first two interviews, I found myself itching to highlight certain sections, and then I thought, heck, why not post some of …
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Sometimes you've really got to wonder.
The Chronical of Higher Ed just posted this article on a collaboration between A. Sean Pue, Tracy K. Teal, and myself. It's about bringing bioinformatics (or, really, CS and computational linguistics) to the study of Urdu poetic meter.
The article has two interesting flaws …
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So, there this guy, Matt Welsh. And he left Harvard to go to Google. OK.
Now he's baaaack, to point out that academia isn't that rosy.
Yep. He's not wrong.
Were I in a sarcastic mood, I would say something like "ohmigod, Matt Welsh is pointing out that …
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I was a reviewer of the PLoS One paper, An Integrated Pipeline for de Novo Assembly of Microbial Genomes, and just recently came across the review again. I didn't post it at the time, but heck, why not now? ;)
Note that for our recent microbial genomes assembly workshop we wrote …
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Software installation is a real problem.
I'm writing this as I return from my fourth Software Carpentry workshop, or -- if you count the one I ran at LLNL almost a decade ago -- my fifth one. This workshop was taught with Karen Cranston and Rich Enbody, both of them very experienced …
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Is khmer evolving?
The khmer project is our software package to work with short reads, and it enables a lot of things like k-mer counting and de Bruijn graph exploration and modification. As data volume grows, interest in partitioning and digital normalization is also growing. But we haven't really talked …
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