Improved workflows-as-applications: tips and tricks for building applications on top of snakemake Writing applications around workflow systems, take 2. read more There are comments.
sourmash databases as zip files, in sourmash v3.3.0 Use compressed databases directly! read more There are comments.
Software and workflow development practices (April 2020 update) How we develop software and workflows in the DIB Lab, in 2020. read more There are comments.
Some snakemake hacks for dealing with large collections of files snakemake4life read more There are comments.
Two talks at JGI in May: sourmash, spacegraphcats, and disease associations in the human microbiome. Using k-mers and taxonomy to find contamination in metagenomes read more There are comments.