As part of our Docker hands-on workshop earlier this month, I learned a lot about building Dockerfiles, running Docker containers on remote hosts with docker-machine, and using data volumes to manage data in remotely hosted Docker containers.
During and after the workshop, I put together Docker images (and, more importantly …
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Pubwication. Pubwication is what bwings us togethew today. Pubwication, that bwessed awwangement, that dweam within a dweam. And authorship, twue authorship, wiww fowwow you fowevah and evah. So tweasuwe youw authorship.
Last week, our software paper on khmer 2.0 was published on F1000Research. We intend this paper to be …
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Note: at the Lab for Data Intensive Biology, we're trying out a new journal club format where we summarize our thoughts on the paper in a blog post. For this blog post, Lisa Cohen wrote the majority of the text and the rest of us added questions and comments; Lisa …
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Below is our first review of the paper Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning by Brian Cleary et al., recently published in Nature Biotech.
All in all, this is one of the most technically interesting papers we've read in a while.
A few interesting tidbits …
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I just heard the sad news that Eric Davidson, my PhD advisor, passed away.
Eric was a giant in the field of developmental biology and gene regulatory networks. His work spanned more than fifty years, and had an indelible impact on gene regulation studies. (You can read up on his …
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Just as I was moving to UC Davis, a funding call for a training coordination center came out. I got partway down the path of applying for it before realizing that I was overwhelmed with the move, but I did generate some text that I thought was OK. Here it …
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Note: this is a blog post from the DIB Lab journal club.
Jump to Questions and Comments:.
The paper:
http://www.techfak.uni-bielefeld.de/~stoye/dropbox/wabi2015final.pdf
"Bloom Filter Trie: a data structure for pan-genome storage."
by Guillaume Holley, Roland Wittler, and Jens Stoye.
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