sourmash v4.0.0 release candidate 1 is now available for comment! sourmash v4.0.0 is coming! read more There are comments.
sourmash databases as zip files, in sourmash v3.3.0 Use compressed databases directly! read more There are comments.
Two talks at JGI in May: sourmash, spacegraphcats, and disease associations in the human microbiome. Using k-mers and taxonomy to find contamination in metagenomes read more There are comments.
sourmash-oddify: a workflow for exploring contamination in metagenome-assembled genomes Using k-mers and taxonomy to find contamination in metagenomes read more There are comments.
Finding problematic bacterial/archaeal genomes using k-mers and taxonomy Some things in Genbank look ...odd. read more There are comments.
How does sourmash's lca classification routine compare with GTDB classifications? GTDB databases again! read more There are comments.