About 10 days ago, I gave a talk in Manchester to Carole Goble's group, hosted by Aleksandra Pawlik. The talk title was "Six ways to Sunday: Approaches to computational reproducibility in non-model sequence analysis." I've posted the slides (here).
For the talk, I put together a list of five things …
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Links, software, thoughts -- all solicited! Add 'em below or send 'em to me, t@idyll.org.
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Imagine... a rolling 48 hour hackathon, internationally teleconferenced, on reproducing analyses in preprints and papers. Each room of contributors could hack on things collaboratively while awake, then pass it on to others in overlapping …
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I recently had the pleasure of meeting with Randy LeVeque, Bill Howe, and Steven Roberts at UW, along with Jory Schossau, after the UW bootcamp that Jory and I ran. I already knew Bill from before (see our conversation on VMs and reproducibility) and Steven had taken the workshop, but …
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In his paper, Reproducible Research and Cloud Computing, Bill Howe asks:
What happens if you do all your work on a virtual machine hosted in the cloud? When it came time to publish, you might make a snapshot of the VM, make it public, and cite it in your paper …read more
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