6. Classifying genome bins using a custom reference database, part I (Saturday Morning Bioinformatics)

   Classifying genome bins! With pictures!

   read more

   There are comments.

7. Taxonomic examinations of genome bins from Tara Oceans (Honorary Sunday Morning Bioinformatics)

   An initial taxonomical investigation of the genome bins.

   read more

   There are comments.

8. Comparing genome sets extracted from metagenomes (Sunday Morning Bioinformatics).

   Two different binning procedures, on different data, produce somewhat different bins. Duh.

   read more

   There are comments.

9. Is your bioinformatics analysis package Big Data ready?

   Plan for incremental data updates when building your tools.

   read more

   There are comments.

10. A post about k-mers - this time for taxonomy!

    A brief literature review: MetaPalette, mash/MinHash, and Kraken.

    read more

    There are comments.

11. Thoughts on my Salmon review

    I was one of the reviewers of the Salmon paper by Patro et al., 2017, Salmon provides fast and bias-aware quantification of transcript expression, and I posted my review in large part because of Lior Pachter's blog post levying charges of intellectual theft and dishonest against the Salmon authors. More …

    read more

    There are comments.

12. My Salmon review

    I was one of the reviewers of the Salmon paper by Patro et al., 2017, Salmon provides fast and bias-aware quantification of transcript expression. I was asked to review the paper on September 14, 2016, and submitted my review (or at least stopped getting reminders :) soon after October 20th.

    The …

    read more

    There are comments.

⇇ « Page 12 / 60 » ⇉