Note: This is the third post in a mini-series of blog posts inspired by the workshop Envisioning the Scientific Paper of the Future.
I've been struggling to put together an interesting talk for the workshop, and last night Gail Clement (our host, @Repositorian) and Justin Bois helped me convinced myself …
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Note: This is the second post in a mini-series of blog posts inspired by the workshop Envisioning the Scientific Paper of the Future.
An important yet rarely articulated assumption of a lot of my work in biological data analysis is that data implies software: it's not much good gathering data …
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Note: This is the first post in what I hope to be a mini-series of blog posts inspired by the workshop Envisioning the Scientific Paper of the Future.
Even preprints go through some review before they're posted, just to make sure they're …
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I'm writing this up for the rOpenSci call on Codes of Conduct that I'm participating in today.
My lab has a lab Code of Conduct.
We adapted it from https://github.com/confcodeofconduct/confcodeofconduct.com. So the "how" was easy enough :).
Key points I want to make:
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One of the uses that we are most interested in MinHash sketches for is the indexing and search of large public, semi-public, and private databases. There are many specific use cases for this, but the basic goal is to be able to find data sets by content queries, using sequence …
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This is an update to last week's blog post, "Efficiently searching MinHash Sketch collections".
Last week, Thanksgiving travel and post-turkey somnolescence gave me some time to work more with our combined MinHash/SBT implementation. One of the main things the last post contained was a collection of MinHash signatures of …
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There is an update to this blog post: please see "Quickly searching all the microbial genomes, mark 2 - now with archaea, phage, fungi, and protists!
Note: This blog post is based largely on work done by Luiz Irber. Camille Scott, Luiz Irber, Lisa Cohen, and Russell Neches all collaborated on …
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