Note: This is the second post in a mini-series of blog posts inspired by the workshop Envisioning the Scientific Paper of the Future.
An important yet rarely articulated assumption of a lot of my work in biological data analysis is that data implies software: it's not much good gathering data …
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Note: This is the first post in what I hope to be a mini-series of blog posts inspired by the workshop Envisioning the Scientific Paper of the Future.
Even preprints go through some review before they're posted, just to make sure they're …
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I'm writing this up for the rOpenSci call on Codes of Conduct that I'm participating in today.
My lab has a lab Code of Conduct.
We adapted it from https://github.com/confcodeofconduct/confcodeofconduct.com. So the "how" was easy enough :).
Key points I want to make:
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One of the uses that we are most interested in MinHash sketches for is the indexing and search of large public, semi-public, and private databases. There are many specific use cases for this, but the basic goal is to be able to find data sets by content queries, using sequence …
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This is an update to last week's blog post, "Efficiently searching MinHash Sketch collections".
Last week, Thanksgiving travel and post-turkey somnolescence gave me some time to work more with our combined MinHash/SBT implementation. One of the main things the last post contained was a collection of MinHash signatures of …
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There is an update to this blog post: please see "Quickly searching all the microbial genomes, mark 2 - now with archaea, phage, fungi, and protists!
Note: This blog post is based largely on work done by Luiz Irber. Camille Scott, Luiz Irber, Lisa Cohen, and Russell Neches all collaborated on …
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Update: Zenodo will remove content upon request by the owner, and hence is not suitable for long-term archiving of published code and data. Please see my comment at the bottom (which is just a quote from an e-mail from a journal editor), and especially see "Ownership" and "Withdrawal" under Zenodo …
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